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EvoLaps
v.39 V40
2
DATA info
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Demo info
Rice Yellow Mottle Virus (RYMV)
RYMV from West Africa
(Trovão et al., 2015) (Dellicour et al., 2018) demo demo
RYMV from East Africa
(Trovão et al., 2015) (Dellicour et al., 2018) demo demo demo
RYMV from Madagascar
(Rakotomalala et al., 2019) demo demo
West Nile Virus (WNV)
WNV from North America
(Pybus et al., 2012) demo demo
Preferences info
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EvoLaps v.39 Oct. 2023 • "Select": new tool enabling the seletion of a node from the phylogenetic tree and display the specific evolutionary scenario for the underlying clade.
• New cartographic backgrounds
• Display of Velocity from PhyREX
EvoLaps v.38 Oct. 2023 • compatibilty with the write.beast function from the Treeio package (Wang et al., 2020, MBE)
• dynamic HPD treshold menu
Warning • 'Shift' load EvoLaps to refresh the cache of the navigator. Hold down the 'Shift' key while clicking the reload button, or 'command' key (or CTRL key) + R
• Computation of ancestral character sets from discrete variables must be performed using the NEXUS data file format with a clustered analysis as the EvoLaps data file format is currently not functional for this purpose.
Manual full pdf
How to cite Chevenet F, Fargette D, Guindon S, Bañuls AL. EvoLaps: a web interface to visualize continuous phylogeographic reconstructions. BMC Bioinformatics. 2021 Sep 27;22(1):463. doi: 10.1186/s12859-021-04386-z. PMID: 34579644; PMCID: PMC8474961. Chevenetet al., 2021
API Icons by Icon8 ⦙ D3LeafletjscolorLeaflet-HeatLeaflet-ArrowheadsjQueryBezier.jssvg-exportJSKmeans
Funding • PALADIN project, publicly funded through the French National Research Agency under the “Investissements d’avenir” program with the reference ANR-10-LABX-04-01 Labex CEMEB,
• GENOSPACE ANR-16-CE02-0008 from the Agence Nationale pour la Recherche.
Acknowledgments D. Hubert for system administration and A. Prudhon for English editing
TRANSITIONS info
Transitions without clustering info
10
Off
Off
Transitions with clustering info
Manual clustering
Lasso:
Clade:
Anchor:
Lat/Lng:
Automatic clustering
K-means
k:
K-means + Lat/Lng info
k:
Clusters color options
Select
Automatic
color matrix
Colors from clusters
Clusters
10
Off
Path options info
Color
Full paths
Monocolor
Transient paths
Opacity
Width
Offset
Highlight
EDITION info
Geographic map info
Layout
no label:
Locations
Metadata info
Intensity map info
Gradient
Layout
info info
info info
info
Phylogenetic tree info
Info
Layout
Scale
Migration distance = f(t) info
Transition tree info
Layout
Branch
Node
Inter-cluster exchange charts info
info
info info
Ancestral character states info
Model:
Priors:
Output
Display
size


Phylogeographic map
Phylogenetic tree