DATA
Discrete analysis
Import info
MCCT
Locations
Upload info
Analysis
Demo info
Continuous analysis
Import info
MCCT
Upload info
Analysis
Demo info
Rice Yellow Mottle Virus (RYMV)
West Africa demo
East Africa demo
Madagascar ref data
West Nile Virus (WNV)
North America ref data
Lassa Virus (LASV)
West Africa ref data
Save info
Outputinfo
TRANSITIONS
Discrete transitions info
Slow motion 40
N Sliding Full H S
Off
Continuous transitions info
Slow motion 40
N Sliding Full H S
Off
Off
Off
Migration distance = f(t) info
Continuous to discrete (clustering) info
Manual clustering
Lasso
Clade
Anchor
Lat/Lng
+ ||
Automatic clustering
K-means k
K-means + Lat/Lng info k
Clusters color options
Select
Automatic
color matrix
Colors from clusters
Clusters
O
Slow motion 10
N Sliding Full H S
Off
Transition tree info
Branch
Ladderize up down
δ↔ δ↕ ||
Node
S O
Sz Txt Font
PATHS
Path options info
Layout
1 2 3 4
Opacity Gradient
Width Gradient
Offset Gradient
Color
Full paths
Monocolor
Gradient
Transient paths
Heads
Size
Highlight
Annotate
MAP
Layout info
Geographic map
no label:
Locations
Lat Lng
Sample Size O
Ancestral Size O
Metadata info
Layer 1D info
Gradient
Layout
Opa. info Blur info
Rad. info Max. info
Zoo. info
Layer 2D info
Boundaries
O > ||
Incidence
→
Gradient with: Quartiles Deciles
Inf/Sup
TREE
Info
Layout info
Ladderize up down
δ↔
δ↕
||
Font
Annotation
Time scale Most recent sampling
Leaf labels
Subtree background info
square outline →
Metadata
string symbol
→ Size
LIBRARY
Ancestral character states info
Model: F81 Joint
Priors: Equiprob. Tree freq.
Output
Display
size
Locations (map)
Clusters (map)
Phylogenetic tree
Transition tree
Threshold:
Color gradient: →
Color scale:
Opacity:
Inter-regions exchange charts info
info info info
PREFERENCES
Map & tree orientation info
Automatic
Windowing info
Background color
Phylogeographic map
Phylogenetic tree